{
  "name": "PRISM-GI",
  "version": "frozen-deepsurv-v1",
  "lambda_value": 0.5,
  "genes": [
    "RNF43",
    "SERPINE1",
    "CTLA4",
    "MUC1",
    "DLAT",
    "MET",
    "CXCL1",
    "MUC2",
    "PDK4",
    "INHBB",
    "IL10",
    "CLCA1",
    "CA9",
    "P4HA1",
    "TIMP1"
  ],
  "rank_pool": [
    "ADAM12",
    "ANXA1",
    "APC",
    "ARID1A",
    "ASF1B",
    "ATF4",
    "ATM",
    "AURKA",
    "AXL",
    "BAX",
    "BCL2",
    "BIRC5",
    "BRAF",
    "BRCA1",
    "BRCA2",
    "C2",
    "C3",
    "CA9",
    "CCNA2",
    "CCNB1",
    "CCND1",
    "CCR6",
    "CD163",
    "CD24",
    "CD34",
    "CD36",
    "CD4",
    "CD44",
    "CD68",
    "CD8A",
    "CDCA8",
    "CDH1",
    "CDK4",
    "CDKN1A",
    "CDKN2A",
    "CDX2",
    "CEACAM5",
    "CENPF",
    "CLCA1",
    "CLDN18",
    "COL1A1",
    "COMP",
    "CP",
    "CSF1R",
    "CTLA4",
    "CXCL1",
    "CXCL10",
    "CXCL2",
    "CXCR4",
    "DDIT3",
    "DLAT",
    "DTL",
    "E2F1",
    "EGFR",
    "ERBB2",
    "ERCC1",
    "EZH2",
    "FAP",
    "FBXW7",
    "FGFR1",
    "FGFR2",
    "FN1",
    "FOXC1",
    "FOXM1",
    "FXYD3",
    "GAPDH",
    "GNAS",
    "GPC1",
    "GPX4",
    "HES1",
    "HGF",
    "HLA-E",
    "HLA-G",
    "IGF1",
    "IGF1R",
    "IGF2BP3",
    "IL10",
    "IL6",
    "IL7R",
    "INHBA",
    "INHBB",
    "JAK2",
    "JUN",
    "KLF4",
    "KLK10",
    "KLK6",
    "KRAS",
    "KRT7",
    "L1CAM",
    "LAG3",
    "LDHA",
    "LIF",
    "LYN",
    "MDM2",
    "MET",
    "MGMT",
    "MLH1",
    "MMP1",
    "MMP11",
    "MMP2",
    "MMP7",
    "MMP9",
    "MSH2",
    "MSH6",
    "MSLN",
    "MUC1",
    "MUC2",
    "MYC",
    "NOTCH1",
    "NPM1",
    "NPY",
    "NQO1",
    "NRAS",
    "NUAK1",
    "P4HA1",
    "PC",
    "PCNA",
    "PDK4",
    "PIK3CA",
    "PLAU",
    "PLK1",
    "POSTN",
    "PTEN",
    "RAD51",
    "RNF43",
    "RUNX3",
    "S100A8",
    "SERPINE1",
    "SERPINH1",
    "SETD1A",
    "SIRT1",
    "SMAD3",
    "SMAD4",
    "SOX11",
    "SOX9",
    "SPARC",
    "SRC",
    "STAT2",
    "STAT3",
    "TCF4",
    "TF",
    "TGFB1",
    "TIMP1",
    "TIMP2",
    "TLR2",
    "TLR4",
    "TP53",
    "TPM1",
    "TTN",
    "TULP3",
    "TWIST1",
    "TYMS",
    "VCAN",
    "VDR",
    "VEGFA",
    "VEGFC",
    "WTAP",
    "YAP1"
  ],
  "training_global": [
    0.4605098948119086,
    0.6462670288297172,
    0.1716542741182761,
    0.7697870019821071,
    0.5601082294212034,
    0.6911790924249889,
    0.742776839742849,
    0.44777039002443586,
    0.44709133430516035,
    0.2904418319297762,
    0.05411995427516688,
    0.3238545195221947,
    0.5135706270384779,
    0.672480152695773,
    0.9683806487472925
  ],
  "mean": [
    0.4605098948119089,
    0.6462670288297172,
    0.17165427411827627,
    0.7697870019821076,
    0.5601082294212032,
    0.6911790924249893,
    0.7427768397428492,
    0.4477703900244357,
    0.4470913343051606,
    0.2904418319297764,
    0.054119954275166984,
    0.32385451952219546,
    0.5135706270384781,
    0.6724801526957729,
    0.9683806487472892
  ],
  "sd": [
    0.1894779598160955,
    0.16690522358627058,
    0.0914307405617693,
    0.1834329978750087,
    0.09088325734449955,
    0.11928508770203357,
    0.1770177209045861,
    0.3196683276688888,
    0.19160421622782225,
    0.16961541322940843,
    0.03465548986363623,
    0.3066927962224337,
    0.27485165181671734,
    0.10290235127311345,
    0.025754690362929336
  ],
  "weights": [
    [
      0.2619969844818115,
      -0.3104326128959656,
      0.05705195665359497,
      -0.4838182032108307,
      0.025294072926044464,
      -0.08376741409301758,
      -0.053625136613845825,
      0.29984644055366516,
      -0.11890833079814911,
      -0.5153786540031433,
      0.21720094978809357,
      0.4914695918560028,
      0.16555678844451904,
      -0.36157122254371643,
      -0.11320938169956207
    ],
    [
      -0.05286930501461029,
      0.22799964249134064,
      -0.5347173810005188,
      -0.17177054286003113,
      0.5050056576728821,
      0.08132000267505646,
      -0.03013104759156704,
      0.0032912008464336395,
      -0.20189878344535828,
      0.664210855960846,
      0.10496073216199875,
      -0.06407184898853302,
      0.27873194217681885,
      0.09169252216815948,
      0.08417702466249466
    ],
    [
      -0.14432287216186523,
      -0.13694605231285095,
      -0.05019893869757652,
      -0.11649709194898605,
      -0.1799543797969818,
      0.11104024201631546,
      0.20831722021102905,
      0.19854897260665894,
      -0.34243491291999817,
      0.13273710012435913,
      -0.030246030539274216,
      -0.10603109747171402,
      -0.2130516618490219,
      -0.35964930057525635,
      -0.13297760486602783
    ],
    [
      0.09037228673696518,
      -0.01344595942646265,
      0.02871880866587162,
      0.07332248240709305,
      -0.1585139036178589,
      -0.12033160775899887,
      -0.24533112347126007,
      0.04535879194736481,
      -0.253165602684021,
      0.07438818365335464,
      -0.2907414734363556,
      -0.05291857197880745,
      -0.05390574038028717,
      0.00490725040435791,
      0.017699604853987694
    ],
    [
      0.13855737447738647,
      -0.20478209853172302,
      -0.1351698487997055,
      0.0324351005256176,
      -0.27624621987342834,
      0.06687487661838531,
      -0.3098597526550293,
      -0.03027310036122799,
      -0.6440383791923523,
      0.12863843142986298,
      -0.3262241780757904,
      -0.09279476851224899,
      -0.1380348801612854,
      0.14969831705093384,
      -0.04668157547712326
    ],
    [
      -0.17347924411296844,
      -0.07603920996189117,
      -0.15081626176834106,
      0.15722009539604187,
      0.10736638307571411,
      -0.11628321558237076,
      0.13098515570163727,
      -0.061191849410533905,
      0.14682328701019287,
      0.2526960074901581,
      0.12073103338479996,
      -0.00941892247647047,
      0.11959709227085114,
      -0.14156734943389893,
      0.010819530114531517
    ],
    [
      -0.4617898762226105,
      0.06128719449043274,
      -0.00964186992496252,
      0.0010675981175154448,
      0.036636196076869965,
      0.21092960238456726,
      -0.17434020340442657,
      -0.12860816717147827,
      0.32161107659339905,
      -0.3654218018054962,
      0.017870597541332245,
      -0.13404306769371033,
      -0.12994487583637238,
      -0.33290350437164307,
      -0.08785048872232437
    ],
    [
      0.00044896319741383195,
      -0.19681011140346527,
      -0.023300865665078163,
      0.2497863620519638,
      0.06279266625642776,
      -0.10404001921415329,
      0.035681553184986115,
      0.021466225385665894,
      0.09246639162302017,
      -0.148105189204216,
      0.21483942866325378,
      -0.07308841496706009,
      0.017318714410066605,
      0.137728750705719,
      -0.035675399005413055
    ],
    [
      0.04660434648394585,
      0.043625444173812866,
      -0.0321316234767437,
      0.0868942141532898,
      0.1315549910068512,
      -0.1617625206708908,
      -0.38732147216796875,
      0.29239699244499207,
      0.0992264375090599,
      0.3547353446483612,
      0.06118583679199219,
      0.22795461118221283,
      -0.2627265155315399,
      -0.20140747725963593,
      -0.007891888730227947
    ],
    [
      -0.12538011372089386,
      -0.040477119386196136,
      -0.055558111518621445,
      0.2576828598976135,
      -0.22975017130374908,
      0.2934221923351288,
      0.19938024878501892,
      0.26893681287765503,
      0.1819450557231903,
      0.3585233688354492,
      0.1676536202430725,
      0.0312027707695961,
      -0.20231103897094727,
      -0.07331233471632004,
      0.20500023663043976
    ],
    [
      0.018691757693886757,
      -0.11396977305412292,
      0.03732317313551903,
      -0.5246520638465881,
      -0.06369494646787643,
      -0.3134179413318634,
      -0.10955391079187393,
      0.052265968173742294,
      -0.0841849222779274,
      -0.29975464940071106,
      0.17552289366722107,
      -0.12944622337818146,
      0.606835663318634,
      -0.2411969006061554,
      -0.011311572976410389
    ],
    [
      -0.2883974015712738,
      -0.025770623236894608,
      -0.1445879340171814,
      -0.023701613768935204,
      -0.3661649525165558,
      0.013014094904065132,
      -0.267215371131897,
      -0.04204786196351051,
      0.033231012523174286,
      -0.23575130105018616,
      -0.10243773460388184,
      0.2819337248802185,
      -0.2727166712284088,
      0.133003830909729,
      -0.1289369910955429
    ],
    [
      0.12620769441127777,
      -0.07833345979452133,
      0.12548910081386566,
      -0.08389201015233994,
      0.25915583968162537,
      0.1831679344177246,
      -0.039079878479242325,
      -0.22014158964157104,
      0.14972488582134247,
      0.15146589279174805,
      0.16213178634643555,
      0.33603861927986145,
      -0.1740708202123642,
      -0.14577090740203857,
      -0.08593981713056564
    ],
    [
      -0.22808468341827393,
      0.20754991471767426,
      -0.10982769727706909,
      -0.08568445593118668,
      -0.1504446119070053,
      -0.061570897698402405,
      -0.12416067719459534,
      -0.4433680772781372,
      0.2023461014032364,
      -0.005638636648654938,
      -0.35341599583625793,
      0.41937822103500366,
      -0.07098107039928436,
      -0.04999730363488197,
      -0.004201516043394804
    ],
    [
      0.13658641278743744,
      -0.20762428641319275,
      -0.004383786115795374,
      -0.23670794069766998,
      -0.09234708547592163,
      0.3542330265045166,
      0.20799465477466583,
      -0.10111898183822632,
      -0.18513789772987366,
      -0.02286936156451702,
      -0.20439493656158447,
      0.32650426030158997,
      -0.3853020966053009,
      -0.20430032908916473,
      -0.15638716518878937
    ],
    [
      0.13555768132209778,
      -0.04547421634197235,
      0.28904613852500916,
      -0.27496102452278137,
      0.18790218234062195,
      -0.25966545939445496,
      0.04763085022568703,
      -0.2843495011329651,
      -0.09197694808244705,
      -0.13945670425891876,
      -0.07158946245908737,
      -0.1774352341890335,
      0.27094656229019165,
      0.22755534946918488,
      -0.17040923237800598
    ]
  ],
  "bias": [
    -0.29605311155319214,
    -0.24954268336296082,
    -0.03369525074958801,
    -0.04788893461227417,
    -0.34656187891960144,
    0.05474260449409485,
    -0.6479212641716003,
    -0.17165258526802063,
    -0.2149653434753418,
    0.17139597237110138,
    -0.22810128331184387,
    -0.3286289870738983,
    -0.369669109582901,
    -0.28781193494796753,
    -0.4155440926551819,
    -0.34835484623908997
  ],
  "output_weights": [
    -0.2849159240722656,
    0.33284834027290344,
    -0.15628261864185333,
    0.022090325132012367,
    0.27732446789741516,
    -0.07315017282962799,
    0.4507863223552704,
    -0.1385626196861267,
    -0.27214130759239197,
    0.2718569040298462,
    -0.31842172145843506,
    0.34820297360420227,
    -0.2797662317752838,
    0.23694834113121033,
    -0.26109203696250916,
    -0.1675993651151657
  ],
  "source_sha256": "b13b6876bb25dadf54801e10286ccd124c4d2d7a013e5c3d10be802846ebae67",
  "minimum_background_genes": 150,
  "preprocessing": "Average-tie percentile ranks within each sample across available locked background genes; select 15 genes; x - 0.5*(cohort_mean-training_global); frozen training scaling; 15-16(tanh)-1 network.",
  "inference_scope": "One homogeneous source cohort and cancer type per run. Cohort-dependent, research-only relative risk score. No baseline hazard or absolute survival probability."
}